By design: The architecture of microbial redox cycling

The authors’ work on mine systems, combines field and laboratory integrated microbial geochemical investigation with high-resolution techniques enabling characterization and visualization at the bacterium scale (i.e. STXM). The results indicate a repeated motif of socially organized microbial cooperation occurring within microbial consortial macrostructures (pods). The pod structure directly enables the specific geochemical processes linked to the metabolic function of the consortial members. These microbially linked geochemical processes have important ramifications for bulk system geochemistry that were previously unknown. Results from two examples: (1) microbial metal interactions within AMD biofilms and (2) sulfur redox cycling by a novel consortia within mine waters, illustrate how the ecology of the pod consortia is linked to pod biogeochemical macrostructure as well as to the resulting geochemistry associated with pod metabolism. In both instances the pod structures enabled the associated consortia to carry out reactions not predicted by classic geochemical understanding of these systems. Investigation of AMD biofilm biogeochemical architecture capturing the micro-scale linkages amongst geochemical gradients, metal dynamics and depth resolved micro-organism community structure, illustrated a novel biomineralization process driven by biofilm associated pods controlling biofilm metal capture. Similarly, the groups’ recent discovery of an environmental S redox cycling, pod-forming, consortium revealed ecologically driven S cycling with previously unknown implications for both AMD mitigation and AMD carbon flux modeling. These results highlight how microbes cooperatively orchestrate their geochemical environment, underscoring the need to consider syntrophic community activity in environmental processes and the requirement for integrated, high-resolution techniques spanning geochemistry, molecular microbiology and imaging to reveal the biogeochemistry involved.     

Developing coastal adaptation to climate change in the New York City infrastructure-shed: process, approach, tools, and strategies

While current rates of sea level rise and associated coastal flooding in the New York City region appear to be manageable by stakeholders responsible for communications, energy, transportation, and water infrastructure, projections for sea level rise and associated flooding in the future, especially those associated with rapid icemelt of the Greenland and West Antarctic Icesheets, may be outside the range of current capacity because extreme events might cause flooding beyond today??s planning and preparedness regimes. This paper describes the comprehensive process, approach, and tools for adaptation developed by the New York City Panel on Climate Change (NPCC) in conjunction with the region??s stakeholders who manage its critical infrastructure, much of which lies near the coast. It presents the adaptation framework and the sea-level rise and storm projections related to coastal risks developed through the stakeholder process. Climate change adaptation planning in New York City is characterized by a multi-jurisdictional stakeholder?Cscientist process, state-of-the-art scientific projections and mapping, and development of adaptation strategies based on a risk-management approach.     

Effect of pressure, temperature, and oxygen fugacity on the metal-silicate partitioning of Te, Se, and S: Implications for earth differentiation

We have measured liquid Fe metal-liquid silicate partitioning (D_i) of tellurium, selenium, and sulfur over a range of pressure, temperature, and oxygen fugacity (1-19 GPa, 2023-2693 K, fO₂ −0.4 to −5.5 log units relative to the iron-wüstite buffer) to better assess the role of metallic melts in fractionating these elements during mantle melting and early Earth evolution. We find that metal-silicate partitioning of all three elements decreases with falling FeO activity in the silicate melt, and that the addition of 5-10 wt% S in the metal phase results in a 3-fold enhancement of both D_Te and D_Se. In general, Te, Se, and S all become more siderophile with increasing pressure, and less siderophile with increasing temperature, in agreement with previous work. In all sulfur-bearing experiments, D_Te is greater than D_Se or D_S, with the latter two being similar over a range of P and T. Parameterized results are used to estimate metal-silicate partitioning at the base of a magma ocean which deepens as accretion progresses, with the equilibration temperature fixed at the peridotite liquidus. We show that during accretion, Te behaves like a highly siderophile element, with expected core/mantle partitioning of >10⁵, in contrast to the observed core/mantle ratio of ∼100. Less extreme differences are observed for Se and S, which yielded core/mantle partitioning 100- to 10 times higher, respectively, than the observed value. Addition of ∼0.5 wt% of a meteorite component (H, EH or EL ordinary chondrite) is sufficient to raise mantle abundances to their current level and erase the original interelement fractionation of metal-silicate equilibrium.     

Carbon isotope fractionation in phospholipid fatty acid biomarkers of bacteria and fungi native to an acid mine drainage lake

This study identifies isotope signatures associated with autotrophic and heterotrophic microbial communities that may provide a means to determine carbon cycling relationships in situ for acid mine drainage (AMD) sites. Stable carbon isotope ratios (δ¹³C) of carbon sources, bulk cells, and membrane phospholipids (PLFA) were measured for autotrophic and heterotrophic microbial enrichment cultures from a mine tailings impoundment in northern Ontario, Canada, and for pure strains of the sulfur oxidizing bacteria Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans. The autotrophic enrichments had indistinguishable PLFA distributions from the pure cultures, and the PLFA cyc-C_19:0 was determined to be a unique biomarker in this system for these sulfur oxidizing bacteria. The PLFA distributions produced by the heterotrophic enrichments were distinct from the autotrophic distributions and the C_18:2 PLFA was identified as a biomarker for these heterotrophic enrichments. Genetic analysis (16S, 18S rRNA) of the heterotrophic cultures indicated that these communities were primarily composed of Acremonium fungi.Stable carbon isotope analysis revealed that bulk cellular material in all autotrophic cultures was depleted in δ¹³C by 5.6–10.9‰ relative to their atmospheric CO₂ derived carbon source, suggesting that inorganic carbon fixation in these cultures is carbon limited. Individual PLFA from these autotrophs were further depleted by 8.2–14.6‰ compared to the bulk cell δ¹³C, which are among the largest biosynthetic isotope fractionation factors between bulk cell and PLFA reported in the literature. In contrast, the heterotrophic bulk cells were not significantly fractionated in δ¹³C relative to their carbon source and heterotrophic PLFA ranged from 3‰ enriched to 4‰ depleted relative to the isotopic composition of their total biomass. These distinct PLFA biomarkers and isotopic fractionations associated with autotrophic and heterotrophic activity in this laboratory study provide potential biomarkers for delineating autotrophic and heterotrophic carbon cycling in AMD environments.     

Impact of stratospheric variability on tropospheric climate change

An improved stratospheric representation has been included in simulations with the Hadley Centre HadGEM1 coupled ocean atmosphere model with natural and anthropogenic forcings for the period 1979–2003. An improved stratospheric ozone dataset is employed that includes natural variations in ozone as well as the usual anthropogenic trends. In addition, in a second set of simulations the quasi biennial oscillation (QBO) of stratospheric equatorial zonal wind is also imposed using a relaxation towards ERA-40 zonal wind values. The resulting impact on tropospheric variability and trends is described. We show that the modelled cooling rate at the tropopause is enhanced by the improved ozone dataset and this improvement is even more marked when the QBO is also included. The same applies to warming trends in the upper tropical troposphere which are slightly reduced. Our stratospheric improvements produce a significant increase of internal variability but no change in the positive trend of annual mean global mean near-surface temperature. Warming rates are increased significantly over a large portion of the Arctic Ocean. The improved stratospheric representation, especially the QBO relaxation, causes a substantial reduction in near-surface temperature and precipitation response to the El Chichón eruption, especially in the tropical region. The winter increase in the phase of the northern annular mode observed in the aftermath of the two major recent volcanic eruptions is partly captured, especially after the El Chichón eruption. The positive trend in the southern annular mode (SAM) is increased and becomes statistically significant which demonstrates that the observed increase in the SAM is largely subject to internal variability in the stratosphere. The possible inclusion in simulations for future assessments of full ozone chemistry and a gravity wave scheme to internally generate a QBO is discussed.     

Suspended particulate grain size dynamics and their implications for trace metal sorption in the Don River

We examined particle size distributions of suspended particulate matter (SPM); physical and environmental influences on the observed distributions; and relationships between particle size and geochemical partitioning of metals, over the fall and winter period in a small urban river (Don River, Toronto, Ontario, Canada). For this dataset, the majority of particles (80%) in suspension were less than 10 µm in size. In addition, while total SPM concentrations showed a positive trend with increasing discharge (Q); the proportions of particles found within given size classes were independent of both SPM concentration and Q. Temperature was the only measured environmental variable related to the particle concentrations within size classes. As water temperature increased, the concentration of particles in the smallest size class (1–4 µm) decreased, while the concentration of silt and/or algae sized particles (10–50 µm) increased. Increasing water temperatures may promote bacterial attachment to particles and their subsequent flocculation into larger sized particles. Decreasing concentrations of leachable (most labile) Cd, Zn and Mn were associated with increasing concentrations of the largest particles (70–150 µm) in suspension. In contrast, higher reducible (oxides) associated concentrations of Cd, Zn and Mn occurred with increasing concentrations of smaller particles (1–10 µm) in suspension. Both of these trends are speculated to reflect the importance of particle surface area for metal sorption reactions.     

Identifying Accessory Mineral Saturation during Differentiation in Granitoid Magmas: an Integrated Approach

Numerical reconstructions of processes that may have operatedduring igneous petrogenesis often model the behaviour of importanttrace elements. The geochemistry of these trace elements maybe controlled by accessory mineral saturation and fractionation.Determination of the saturation point of accessory mineralsin granitoid rocks is ambiguous because assumptions about crystalmorphology and melt compositions do not always hold. An integratedapproach to identifying accessory mineral saturation involvingpetrography, whole-rock geochemical trends, saturation calculationsand mineral chemistry changes is demonstrated here for a compositionallyzoned pluton. Within and between whole-rock samples of the BoggyPlain zoned pluton, eastern Australia, the rare earth element(REE)-enriched accessory minerals zircon, apatite and titaniteexhibit compositional variations that are related to saturationin the bulk magma, localized saturation in intercumulus meltpools and fractionation of other mineral phases. Apatite isidentified as having been an early crystallizing phase overnearly the whole duration of magma cooling, with zircon (andallanite) only saturating in more felsic zones. Titanite andmonazite did not saturate in the bulk magma at any stage ofdifferentiation. Although some trace elements (P, Ca, Sc, Nb,Hf, Ta) in zircon exhibit compositional variation progressingfrom mafic to more felsic whole-rock samples, normalized REEpatterns and abundances (except Ce) do not vary with progressivedifferentiation. This is interpreted to be a result of limitationsto both simple ‘xenotime’ and complex xenotime-typecoupled substitutions. Our data indicate that zircon REE characteristicsare not as useful as those of other REE-rich accessory mineralsas a petrogenetic indicator. KEY WORDS: saturation; zircon; apatite; titanite; magma differentiation; trace elements; REE patterns     

The alignment of clusters using large-scale simulations

The alignment of clusters of galaxies with their nearest neighbours and between clusters within a supercluster is investigated using simulations of 512³ dark matter particles for ΛCDM and τ CDM cosmological models. Strongly significant alignments are found for separations of up to 15  h ⁻¹ Mpc in both cosmologies, but for the ΛCDM model the alignments extend up to separations of 30  h ⁻¹ Mpc. The effect is strongest for nearest neighbours, but is not significant enough to be useful as an observational discriminant between cosmologies. As a check of whether this difference in alignments is present in other cosmologies, smaller simulations with 256³ particles are investigated for four different cosmological models. Because of poor number statistics, only the standard CDM model shows indications of having different alignments from the other models.     

Authorship,Collaboration, and Gender: Fifteen Years of Publication Productivity in Selected Geography Journals

In academia, publication productivity, defined as the number of peer-reviewed articles published and the frequency of citations, is a primary factor in the assessment of tenure and promotion. One of the most cited gender differences in academia is the “productivity puzzle,” which suggests that women publish less than men, thereby affecting every aspect of a woman's academic career. Peer-reviewed articles published in the Annals of the Association of American Geographers (Annals) and The Professional Geographer (PG) between 1995 and 2006, and in four subdisciplinary journals between 2005 and 2009, as well as citation reports, were used to explore whether gender differences are present in publication productivity. Gender differences were evident in the proportion of women authors, the frequency of collaboration, and the number of citations across a broad range of prestigious geographic journals. For all journals studied, women were underrepresented, especially in the authorship positions that equate to notions of respect and merit. Although the number of collaborative articles increased during the study period, single-authored papers are the dominant mode of publication for both men and women for most geographic journals. The authorship patterns for frequently cited articles generally mirror those for all articles. Because the frequency of collaborative publication was high for women, the dual trends of a general increase in publication collaboration and increasing participation of women in academic geography bodes well for increased female productivity as it relates to publishing. Nevertheless, it is important to note that, currently, males as lead or single authors represent the predominant voice of geography within the journals examined in this study.     

Tropical and extratropical cyclone damages under climate change

This paper provides the first quantitative synthesis of the rapidly growing literature on future tropical and extratropical cyclone damages under climate change. We estimate a probability distribution for the predicted impact of changes in global surface air temperatures on future storm damages, using an ensemble of 478 estimates of the temperature-damage relationship from nineteen studies. Our analysis produces three main empirical results. First, we find strong but not conclusive support for the hypothesis that climate change will cause damages from tropical cyclones and wind storms to increase, with most models predicting higher future storm damages due to climate change. Second, there is substantial variation in projected changes in losses across regions. Potential changes in damages are greatest in the North Atlantic basin, where the multi-model average predicts that a 2.5 °C increase in global surface air temperature would cause hurricane damages to increase by 63 %. The ensemble predictions for Western North Pacific tropical cyclones and European wind storms (extratropical cyclones) are +28 % and +23 %, respectively. Finally, our analysis shows that existing models of storm damages under climate change generate a wide range of predictions, ranging from moderate decreases to very large increases in losses.